Running the Tutorial¶
Clone github repository¶
git clone https://github.com/nmdp-bioinformatics/flow-blast-hml
cd flow-blast-hml
Install nextflow¶
curl -fsSL get.nextflow.io | bash
Start docker machine¶
docker-machine start default
eval $(docker-machine env default)
Execute¶
./nextflow run nmdp-bioinformatics/flow-blast-hml -with-docker \
nmdpbioinformatics/docker-blast-hml \
--hml tutorial/ex00_ngsp_expected.xml \
--outdir tutorial/output --report 0