Running the Tutorial

Clone github repository

git clone https://github.com/nmdp-bioinformatics/flow-blast-hml
cd flow-blast-hml

Install nextflow

curl -fsSL get.nextflow.io | bash

Start docker machine

docker-machine start default
eval $(docker-machine env default)

Execute

./nextflow run nmdp-bioinformatics/flow-blast-hml -with-docker \
nmdpbioinformatics/docker-blast-hml \
--hml tutorial/ex00_ngsp_expected.xml \
--outdir tutorial/output --report 0